diff --git a/env/CMakeLists.txt b/env/CMakeLists.txt
index d1b8a8d..f2500b9 100644
--- a/env/CMakeLists.txt
+++ b/env/CMakeLists.txt
@@ -85,7 +85,7 @@ add_custom_command(TARGET ${EXECUTABLE}
 find_package(Doxygen)
 if (DOXYGEN_FOUND)
     # set input and output files
-    set(DOXYGEN_IN ${CMAKE_CURRENT_SOURCE_DIR}/config_files/doxyfile.in)
+    set(DOXYGEN_IN ${CMAKE_CURRENT_SOURCE_DIR}/config/doxyfile.in)
     set(DOXYGEN_OUT ${CMAKE_CURRENT_BINARY_DIR}/doxyfile)
 
     # request to configure the file
diff --git a/run.sh b/run.sh
index 5d9a3bd..c46e99c 100755
--- a/run.sh
+++ b/run.sh
@@ -1,7 +1,5 @@
 #!/bin/bash
-
 CSL_TO_USE=$1
-CSL_LIST=$(ls -d -- ked/csl)
 FILE=../build
 
 cd env